Bioschemas Profiles Propose a new profile
The Bioschemas' profiles define a community agreed layer over the Schema.org vocabulary, providing additional constraints. These constraints capture (i) the information properties agreed by the community which are minimum (M), recommended (R), or optional (O), (ii) the cardinality of the property, i.e. whether it is expected to occur once or many times, and (iii) associated controlled vocabulary terms drawn from existing ontologies.
These guidelines provide community best practice that lead to consistent markup of life sciences resources on the Web. Comments and discussions on the mailing list or GitHub issue tracker are encouraged.
RELEASE
Released profiles have been agreed by the community and are widely deployed.
Please note that there may be a newer version in draft status when the community agree that a refinement is needed. Where applicable, these are linked from the release version with the label 'Latest draft'.
Note: In May 2020 we adopted a new set of governance rules which affect the numbering of our profiles. Since May 2020, new releases are given the next major release number, i.e. are of the form X.0-RELEASE.
Name | Group | Use Cases | Cross Walk | Task & Issues | Examples | Live Deploys |
---|---|---|---|---|---|---|
ChemicalSubstance (v0.4-RELEASE) 07 April 2020 |
Chemicals | |||||
ComputationalTool (v1.0-RELEASE) 11 October 2021 |
Tools | |||||
ComputationalWorkflow (v1.0-RELEASE) 09 March 2021 |
Workflow | |||||
Course (v1.0-RELEASE) 13 September 2022 |
Training | |||||
CourseInstance (v1.0-RELEASE) 13 September 2022 |
Training | |||||
DataCatalog (v0.3-RELEASE-2019_07_01) 01 July 2019 |
Data Repositories | |||||
Dataset (v1.0-RELEASE) 12 July 2022 |
Datasets | |||||
FormalParameter (v1.0-RELEASE) 09 March 2021 |
Workflow | |||||
Gene (v1.0-RELEASE) 07 April 2021 |
Genes | |||||
MolecularEntity (v0.5-RELEASE) 07 April 2020 |
Chemicals | |||||
Protein (v0.11-RELEASE) 07 April 2020 |
Proteins | |||||
Sample (v0.2-RELEASE-2018_11_10) 10 November 2018 |
Samples | |||||
Taxon (v1.0-RELEASE) 01 May 2023 |
Biodiversity | |||||
TaxonName (v1.0-RELEASE) 01 May 2023 |
Biodiversity | |||||
TrainingMaterial (v1.0-RELEASE) 01 June 2022 |
Training |
DRAFT
Draft profiles are actively being worked on and are likely to change. Discussions take place on the mailing list and the GitHub issue tracker.
Draft profiles are either working towards their first release or are refinements of a previously released version.
Name | Group | Use Cases | Cross Walk | Task & Issues | Examples | Live Deploys |
---|---|---|---|---|---|---|
BioSample (v0.1-DRAFT-2019_11_12) 12 November 2019 |
Samples | |||||
ChemicalSubstance (v0.5-DRAFT) 05 August 2023 |
Chemicals | |||||
ComputationalTool (v1.1-DRAFT) 21 April 2023 |
Tools | |||||
ComputationalWorkflow (v1.1-DRAFT) 12 November 2023 |
Workflow | |||||
Course (v1.1-DRAFT) 06 April 2023 |
||||||
CourseInstance (v1.1-DRAFT) 06 April 2023 |
Training | |||||
DataCatalog (v0.4-DRAFT) 11 November 2022 |
Data Repositories | |||||
Dataset (v1.1-DRAFT) 11 November 2022 |
Datasets | |||||
DefinedTerm (v0.1-DRAFT) 21 December 2023 |
Datasets | |||||
Disease (v0.2-DRAFT) 11 November 2022 |
Diseases | |||||
Event (v0.3-DRAFT) 21 November 2022 |
Events | |||||
FormalParameter (v1.1-DRAFT) 11 November 2022 |
Workflow | |||||
Gene (v1.2-DRAFT) 21 November 2022 |
Genes | |||||
Journal (v0.3-DRAFT) 11 November 2022 |
Scholarly Publications | |||||
LabProtocol (v0.8-DRAFT) 23 January 2024 |
Laboratory Protocols | |||||
MolecularEntity (v0.7-DRAFT) 22 April 2023 |
Chemicals | |||||
Organization (v0.3-DRAFT) 21 November 2022 |
Organizations | |||||
Person (v0.3-DRAFT) 21 November 2022 |
People | |||||
Phenotype (v0.2-DRAFT) 21 November 2022 |
Phenotypes | |||||
Protein (v0.12-DRAFT) 10 June 2021 |
Proteins | |||||
ProteinStructure (v0.6-DRAFT) 21 November 2022 |
Proteins | |||||
PublicationIssue (v0.3-DRAFT) 11 November 2022 |
Scholarly Publications | |||||
PublicationVolume (v0.3-DRAFT) 11 November 2022 |
Scholarly Publications | |||||
RNA (v0.2-DRAFT) 10 November 2022 |
||||||
Sample (v0.3-DRAFT) 06 April 2023 |
Samples | |||||
ScholarlyArticle (v0.3-DRAFT) 11 November 2022 |
Scholarly Publications | |||||
SemanticTextAnnotation (v0.3-DRAFT) 21 November 2022 |
Scholarly Publications | |||||
SequenceAnnotation (v0.7-DRAFT) 21 November 2022 |
Proteins | |||||
SequenceRange (v0.2-DRAFT) 21 November 2022 |
Proteins | |||||
Study (v0.3-DRAFT) 11 November 2022 |
Studies | |||||
Taxon (v0.8-DRAFT) 21 December 2022 |
Biodiversity | |||||
TaxonName (v0.2-DRAFT) 21 November 2022 |
Biodiversity | |||||
TrainingMaterial (v1.1-DRAFT) 21 November 2022 |
Training |
DEPRECATED
A profile can be deprecated because:
- The working group decided that the profile is no longer required, e.g. the work undertaken was deemed unsatisfactory, or failed to accomplish the desired objective(s), or has been superseded by some other activity; or
- The working group developing it have suspended work.
If you would like to continue work on one of these profiles then please email the community public-bioschemas@w3.org to discuss.
Name | Group | Use Cases | Cross Walk | Task & Issues | Examples | Live Deploys |
---|---|---|---|---|---|---|
Beacon (v0.2-DRAFT-2018_04_23) 23 April 2018 Deprecated on: 2019-11-22 |
Beacons | |||||
DataRecord (v0.2-DRAFT-2019_06_14) 14 June 2019 Deprecated on: 2021-02-22 |
Datasets | |||||
ProteinAnnotation (v0.6-DRAFT) 14 November 2018 Deprecated on: superseded by: SequenceAnnotation |
Proteins |