Phenotype DRAFT Profile
Version: 0.2-DRAFT (21 November 2022)
If you spot any errors or omissions with this type, please file an issue in our GitHub.
Key to specification table
- Green properties/types are proposed by Bioschemas, or indicate proposed changes by Bioschemas to Schema.org
- Red properties/types exist in the core of Schema.org
- Blue properties/types exist in the pending area of Schema.org
- Black properties/types are reused from external vocabularies/ontologies
CD = Cardinality
Property | Expected Type | Description | CD | Controlled Vocabulary | Example |
---|---|---|---|---|---|
Marginality: Minimum. | |||||
@context | URL | Used to provide the context (namespaces) for the JSON-LD file. Not needed in other serialisations. |
ONE | ||
@type | Text | Schema.org/Bioschemas class for the resource declared using JSON-LD syntax. For other serialisations please use the appropriate mechanism. While it is permissible to provide multiple types, it is preferred to use a single type. |
MANY | Schema.org, Bioschemas | |
@id | IRI | Used to distinguish the resource being described in JSON-LD. For other serialisations use the appropriate approach. | ONE | ||
dct:conformsTo | IRI | Used to state the Bioschemas profile that the markup relates to. The versioned URL of the profile must be used. Note that we use a CURIE in the table here but the full URL for Dublin Core terms must be used in the markup (http://purl.org/dc/terms/conformsTo), see example. |
ONE | Bioschemas profile versioned URL | |
identifier |
PropertyValue Text URL |
Schema: The identifier property represents any kind of identifier for any kind of Thing, such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See background notes for more details. |
ONE | ||
name |
Text |
Schema: The name of the item. |
ONE | ||
Marginality: Recommended. | |||||
bioChemAssociation |
BioChemEntity |
Schema: BioChemEntity, e.g., gene, associated to this Phenotype and relevant for its characterization, particularly useful for the molecular basis of this Phenotype. |
MANY | ||
description |
Text |
Schema: A description of the item. |
ONE | ||
sameAs |
URL |
Schema: URL of a reference Web page that unambiguously indicates the item’s identity. E.g. the URL of the item’s Wikipedia page, Wikidata entry, or official website. |
MANY | ||
taxonomicRange |
Taxon Text URL |
Schema: The taxonomic grouping of the organism that expresses the Phenotype. |
ONE | ||
url |
URL |
Schema: Link to the official webpage associated to this entity. URL of the item. |
ONE | ||
Marginality: Optional. | |||||
additionalProperty |
PropertyValue |
Schema: Before using this property, make sure none of the existing ones covers your case. Whenever possible, please use a property coined in a third-party well-know vocabulary. Please always use (i) property name to specify the name of the property, (ii) additionalType (if possible) to better specify the nature of the property (e.g., link to the third-party well-known vocabulary term), and (iii) value to link to the object/range of this property. A property-value pair representing an additional characteristics of the entitity, e.g. a product feature or another characteristic for which there is no matching property in schema.org. Note: Publishers should be aware that applications designed to use specific schema.org properties (e.g. http://schema.org/width, http://schema.org/color, http://schema.org/gtin13, …) will typically expect such data to be provided using those properties, rather than using the generic property/value mechanism. |
MANY | ||
alternateName |
Text |
Schema: An alias for the item. |
MANY | ||
anatomicalLocation |
DefinedTerm |
Schema: Any part of an organism, typically a component of an anatomical system. Organs, tissues, and cells are all anatomical locations. |
MANY | ||
associatedDisease |
MedicalCondition Propertyvalue URL |
Schema: Disease associated to this BioChemEntity. Such a disease can be a MedicalCondition or a URL. If you want to add an evidence supporting the association, please use PropertyValue. |
MANY | ||
hasMolecularFunction |
DefinedTerm Propertyvalue URL |
Schema: Molecular function performed by this Phenotype. |
MANY | ||
image |
ImageObject URL |
Schema: An image of the item. This can be a URL or a fully described ImageObject. |
MANY | ||
isInvolvedInBiologicalProcess |
DefinedTerm Propertyvalue URL |
Schema: Biological process this Phenotype is involved in. |
MANY | ||
isLocatedInSubcellularLocation |
DefinedTerm Propertyvalue URL |
Schema: Subcellular location where this Phenotype is located. |
MANY | ||
mainEntityOfPage |
CreativeWork URL |
Schema: Link via DataRecord to the main DataRecord representing this entity in a dataset. It is usually preferred to use mainEntity from a DataRecord to point to its corresponding entity. Indicates a page (or other CreativeWork) for which this thing is the main entity being described. See background notes for details. Inverse property: mainEntity. |
ONE | ||
valueReference |
DefinedTerm |
Schema: A DefinedTerm in this code set. |
MANY |