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Bioschemas Profiles
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The Bioschemas' profiles define a community agreed layer over the Schema.org vocabulary, providing additional constraints. These constraints capture (i) the information properties agreed by the community which are minimum (M), recommended (R), or optional (O), (ii) the cardinality of the property, i.e. whether it is expected to occur once or many times, and (iii) associated controlled vocabulary terms drawn from existing ontologies.

These guidelines provide community best practice that lead to consistent markup of life sciences resources on the Web. Comments and discussions on the mailing list or GitHub issue tracker are encouraged.


RELEASE

Released profiles have been agreed by the community and are widely deployed.

Please note that there may be a newer version in draft status when the community agree that a refinement is needed. Where applicable, these are linked from the release version with the label 'Latest draft'.

Note: In May 2020 we adopted a new set of governance rules which affect the numbering of our profiles. Since May 2020, new releases are given the next major release number, i.e. are of the form X.0-RELEASE.

Name Group Use Cases Cross Walk Task & Issues Examples Live Deploys
ChemicalSubstance
(v0.4-RELEASE)
07 April 2020 		Chemicals View Bioschemas ChemicalSubstance Use Cases View Bioschemas ChemicalSubstance Cross Walk Bioschemas ChemicalSubstance Github Tasks or Issues View Bioschemas ChemicalSubstance Examples View Bioschemas ChemicalSubstance Examples
ComputationalWorkflow
(v1.0-RELEASE)
09 March 2021 		Workflow View Bioschemas ComputationalWorkflow Use Cases View Bioschemas ComputationalWorkflow Cross Walk Bioschemas ComputationalWorkflow Github Tasks or Issues View Bioschemas ComputationalWorkflow Examples View Bioschemas ComputationalWorkflow Examples
DataCatalog
(v0.3-RELEASE-2019_07_01)
01 July 2019 		Data Repositories View Bioschemas DataCatalog Use Cases View Bioschemas DataCatalog Cross Walk Bioschemas DataCatalog Github Tasks or Issues View Bioschemas DataCatalog Examples View Bioschemas DataCatalog Examples
Dataset
(v0.3-RELEASE-2019_06_14)
14 June 2019 		Datasets View Bioschemas Dataset Use Cases View Bioschemas Dataset Cross Walk Bioschemas Dataset Github Tasks or Issues View Bioschemas Dataset Examples View Bioschemas Dataset Examples
FormalParameter
(v1.0-RELEASE)
09 March 2021 		Workflow View Bioschemas FormalParameter Use Cases View Bioschemas FormalParameter Cross Walk Bioschemas FormalParameter Github Tasks or Issues View Bioschemas FormalParameter Examples View Bioschemas FormalParameter Examples
Gene
(v1.0-RELEASE)
07 April 2021 		Genes View Bioschemas Gene Use Cases View Bioschemas Gene Cross Walk Bioschemas Gene Github Tasks or Issues View Bioschemas Gene Examples View Bioschemas Gene Examples
MolecularEntity
(v0.5-RELEASE)
07 April 2020 		Chemicals View Bioschemas MolecularEntity Use Cases View Bioschemas MolecularEntity Cross Walk Bioschemas MolecularEntity Github Tasks or Issues View Bioschemas MolecularEntity Examples View Bioschemas MolecularEntity Examples
Protein
(v0.11-RELEASE)
07 April 2020 		Proteins View Bioschemas Protein Use Cases View Bioschemas Protein Cross Walk Bioschemas Protein Github Tasks or Issues View Bioschemas Protein Examples View Bioschemas Protein Examples
Sample
(v0.2-RELEASE-2018_11_10)
10 November 2018 		Samples View Bioschemas Sample Use Cases View Bioschemas Sample Cross Walk Bioschemas Sample Github Tasks or Issues View Bioschemas Sample Examples View Bioschemas Sample Examples
Taxon
(v0.6-RELEASE)
07 April 2020 		Biodiversity View Bioschemas Taxon Use Cases View Bioschemas Taxon Cross Walk Bioschemas Taxon Github Tasks or Issues View Bioschemas Taxon Examples View Bioschemas Taxon Examples

DRAFT

Draft profiles are actively being worked on and are likely to change. Disucssions take place on the mailing list and the GitHub issue tracker.

Draft profiles are either working towards their first release or are refinements of a previously released version.

Name Group Use Cases Cross Walk Task & Issues Examples Live Deploys
BioSample
(v0.1-DRAFT-2019_11_12)
12 November 2019 		Samples View Bioschemas BioSample Use Cases View Bioschemas BioSample Cross Walk Bioschemas BioSample Github Tasks or Issues View Bioschemas BioSample Examples View Bioschemas BioSample Examples
ComputationalTool
(v0.5-DRAFT)
26 November 2019 		Tools View Bioschemas ComputationalTool Use Cases View Bioschemas ComputationalTool Cross Walk Bioschemas ComputationalTool Github Tasks or Issues View Bioschemas ComputationalTool Examples View Bioschemas ComputationalTool Examples
Course
(v0.9-DRAFT-2020_12_08)
08 December 2020 		Training View Bioschemas Course Use Cases View Bioschemas Course Cross Walk Bioschemas Course Github Tasks or Issues View Bioschemas Course Examples View Bioschemas Course Examples
CourseInstance
(v0.8-DRAFT-2020_10_06)
06 October 2020 		Training View Bioschemas CourseInstance Use Cases View Bioschemas CourseInstance Cross Walk Bioschemas CourseInstance Github Tasks or Issues View Bioschemas CourseInstance Examples View Bioschemas CourseInstance Examples
Dataset
(v0.4-DRAFT)
30 March 2021 		Datasets View Bioschemas Dataset Use Cases View Bioschemas Dataset Cross Walk Bioschemas Dataset Github Tasks or Issues View Bioschemas Dataset Examples View Bioschemas Dataset Examples
Disease
(v0.1-DRAFT)
28 May 2021 		Diseases View Bioschemas Disease Use Cases View Bioschemas Disease Cross Walk Bioschemas Disease Github Tasks or Issues View Bioschemas Disease Examples View Bioschemas Disease Examples
Event
(v0.2-DRAFT-2019_06_14)
14 June 2019 		Events View Bioschemas Event Use Cases View Bioschemas Event Cross Walk Bioschemas Event Github Tasks or Issues View Bioschemas Event Examples View Bioschemas Event Examples
Journal
(v0.2-DRAFT-2020_12_03)
07 December 2020 		Scholarly Publications View Bioschemas Journal Use Cases View Bioschemas Journal Cross Walk Bioschemas Journal Github Tasks or Issues View Bioschemas Journal Examples View Bioschemas Journal Examples
LabProtocol
(v0.6-DRAFT-2020_12_08)
08 December 2020 		Laboratory Protocols View Bioschemas LabProtocol Use Cases View Bioschemas LabProtocol Cross Walk Bioschemas LabProtocol Github Tasks or Issues View Bioschemas LabProtocol Examples View Bioschemas LabProtocol Examples
Organization
(v0.2-DRAFT-2019_07_19)
19 July 2019 		Organizations View Bioschemas Organization Use Cases View Bioschemas Organization Cross Walk Bioschemas Organization Github Tasks or Issues View Bioschemas Organization Examples View Bioschemas Organization Examples
Person
(v0.2-DRAFT-2019_07_19)
19 July 2019 		People View Bioschemas Person Use Cases View Bioschemas Person Cross Walk Bioschemas Person Github Tasks or Issues View Bioschemas Person Examples View Bioschemas Person Examples
Phenotype
(v0.2-DRAFT)
05 June 2020 		Phenotypes View Bioschemas Phenotype Use Cases View Bioschemas Phenotype Cross Walk Bioschemas Phenotype Github Tasks or Issues View Bioschemas Phenotype Examples View Bioschemas Phenotype Examples
ProteinAnnotation
(v0.6-DRAFT)
14 November 2018 		Proteins View Bioschemas ProteinAnnotation Use Cases View Bioschemas ProteinAnnotation Cross Walk Bioschemas ProteinAnnotation Github Tasks or Issues View Bioschemas ProteinAnnotation Examples View Bioschemas ProteinAnnotation Examples
ProteinStructure
(v0.5-DRAFT-2018_08_15)
15 August 2018 		Proteins View Bioschemas ProteinStructure Use Cases View Bioschemas ProteinStructure Cross Walk Bioschemas ProteinStructure Github Tasks or Issues View Bioschemas ProteinStructure Examples View Bioschemas ProteinStructure Examples
PublicationIssue
(v0.2-DRAFT-2020_12_03)
07 December 2020 		Scholarly Publications View Bioschemas PublicationIssue Use Cases View Bioschemas PublicationIssue Cross Walk Bioschemas PublicationIssue Github Tasks or Issues View Bioschemas PublicationIssue Examples View Bioschemas PublicationIssue Examples
PublicationVolume
(v0.2-DRAFT-2020_12_03)
07 December 2020 		Scholarly Publications View Bioschemas PublicationVolume Use Cases View Bioschemas PublicationVolume Cross Walk Bioschemas PublicationVolume Github Tasks or Issues View Bioschemas PublicationVolume Examples View Bioschemas PublicationVolume Examples
RNA
(v0.1-DRAFT-2019_11_15)
15 November 2019 		View Bioschemas RNA Use Cases View Bioschemas RNA Cross Walk Bioschemas RNA Github Tasks or Issues View Bioschemas RNA Examples View Bioschemas RNA Examples
ScholarlyArticle
(v0.2-DRAFT-2020_12_03)
07 December 2020 		Scholarly Publications View Bioschemas ScholarlyArticle Use Cases View Bioschemas ScholarlyArticle Cross Walk Bioschemas ScholarlyArticle Github Tasks or Issues View Bioschemas ScholarlyArticle Examples View Bioschemas ScholarlyArticle Examples
SemanticTextAnnotation
(v0.2-DRAFT-2020_12_03)
07 December 2020 		Scholarly Publications View Bioschemas SemanticTextAnnotation Use Cases View Bioschemas SemanticTextAnnotation Cross Walk Bioschemas SemanticTextAnnotation Github Tasks or Issues View Bioschemas SemanticTextAnnotation Examples View Bioschemas SemanticTextAnnotation Examples
Study
(v0.2-DRAFT)
16 December 2020 		Studies View Bioschemas Study Use Cases View Bioschemas Study Cross Walk Bioschemas Study Github Tasks or Issues View Bioschemas Study Examples View Bioschemas Study Examples
Taxon
(v0.7-DRAFT)
09 June 2020 		Biodiversity View Bioschemas Taxon Use Cases View Bioschemas Taxon Cross Walk Bioschemas Taxon Github Tasks or Issues View Bioschemas Taxon Examples View Bioschemas Taxon Examples
TaxonName
(v0.1-DRAFT)
09 June 2020 		Biodiversity View Bioschemas TaxonName Use Cases View Bioschemas TaxonName Cross Walk Bioschemas TaxonName Github Tasks or Issues View Bioschemas TaxonName Examples View Bioschemas TaxonName Examples
TrainingMaterial
(v0.9-DRAFT-2020_12_08)
08 December 2020 		Training View Bioschemas TrainingMaterial Use Cases View Bioschemas TrainingMaterial Cross Walk Bioschemas TrainingMaterial Github Tasks or Issues View Bioschemas TrainingMaterial Examples View Bioschemas TrainingMaterial Examples

DEPRECATED

A profile can be deprecated because:

  • The working group decided that the profile is no longer required, e.g. the work undertaken was deemed unsatisfactory, or failed to accomplish the desired objective(s), or has been superceded by some other activity; or
  • The working group developing it have suspended work.

If you would like to continue work on one of these profiles then please email the community public-bioschemas@w3.org to discuss.

Name Group Use Cases Cross Walk Task & Issues Examples Live Deploys
Beacon
(v0.2-DRAFT-2018_04_23)
23 April 2018

deprecated on: 2019-11-22

 Beacons View Bioschemas Beacon Use Cases View Bioschemas Beacon Cross Walk Bioschemas Beacon Github Tasks or Issues View Bioschemas Beacon Examples View Bioschemas Beacon Examples
DataRecord
(v0.2-DRAFT-2019_06_14)
14 June 2019

deprecated on: 2021-02-22

 Datasets View Bioschemas DataRecord Use Cases View Bioschemas DataRecord Cross Walk Bioschemas DataRecord Github Tasks or Issues View Bioschemas DataRecord Examples View Bioschemas DataRecord Examples

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