Bioschemas Profiles
The Bioschemas' profiles define a community agreed layer over the Schema.org vocabulary, providing additional constraints. These constraints capture (i) the information properties agreed by the community which are minimum (M), recommended (R), or optional (O), (ii) the cardinality of the property, i.e. whether it is expected to occur once or many times, and (iii) associated controlled vocabulary terms drawn from existing ontologies.
These guidelines provide community best practice that lead to consisent markup of life sciences resources on the Web. Comments and discussions on the mailing list or GitHub issue tracker are encouraged.
RELEASE
| Name | Group | Use Cases | Cross Walk | Task & Issues | Examples | Live Deploys |
|---|---|---|---|---|---|---|
| ChemicalSubstance (v0.4-RELEASE) 07 April 2020 |
Chemicals |
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| ComputationalWorkflow (v1.0-RELEASE) 09 March 2021 |
Workflow |
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| DataCatalog (v0.3-RELEASE-2019_07_01) 01 July 2019 |
Data Repositories |
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| Dataset (v0.3-RELEASE-2019_06_14) 14 June 2019 |
Datasets |
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| FormalParameter (v1.0-RELEASE) 09 March 2021 |
Workflow |
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| Gene (v0.7-RELEASE) 07 April 2020 |
Genes |
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| MolecularEntity (v0.5-RELEASE) 07 April 2020 |
Chemicals |
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| Protein (v0.11-RELEASE) 07 April 2020 |
Proteins |
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| Sample (v0.2-RELEASE-2018_11_10) 10 November 2018 |
Samples |
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| Taxon (v0.6-RELEASE) 07 April 2020 |
Biodiversity |
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DRAFT
Draft profiles are actively being worked on and are likely to change. Disucssions take place on the mailing list and the GitHub issue tracker.
Draft profiles are either working towards their first release or are refinements of a previously released version.
| Name | Group | Use Cases | Cross Walk | Task & Issues | Examples | Live Deploys |
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| BioSample (v0.1-DRAFT-2019_11_12) 12 November 2019 |
Samples |
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| ComputationalTool (v0.5-DRAFT) 26 November 2019 |
Tools |
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| Course (v0.9-DRAFT-2020_12_08) 08 December 2020 |
Training |
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| CourseInstance (v0.8-DRAFT-2020_10_06) 06 October 2020 |
Training |
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| Dataset (v0.4-DRAFT) 30 March 2021 |
Datasets |
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| Event (v0.2-DRAFT-2019_06_14) 14 June 2019 |
Events |
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| Journal (v0.2-DRAFT-2020_12_03) 07 December 2020 |
Scholarly Publications |
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| LabProtocol (v0.6-DRAFT-2020_12_08) 08 December 2020 |
Laboratory Protocols |
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| Organization (v0.2-DRAFT-2019_07_19) 19 July 2019 |
Organizations |
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| Person (v0.2-DRAFT-2019_07_19) 19 July 2019 |
People |
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| Phenotype (v0.2-DRAFT) 05 June 2020 |
Phenotypes |
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| ProteinAnnotation (v0.4-DRAFT-2018_02_25) 25 February 2018 |
Proteins |
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| ProteinStructure (v0.5-DRAFT-2018_08_15) 15 August 2018 |
Proteins |
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| PublicationIssue (v0.2-DRAFT-2020_12_03) 07 December 2020 |
Scholarly Publications |
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| PublicationVolume (v0.2-DRAFT-2020_12_03) 07 December 2020 |
Scholarly Publications |
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| RNA (v0.1-DRAFT-2019_11_15) 15 November 2019 |
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| ScholarlyArticle (v0.2-DRAFT-2020_12_03) 07 December 2020 |
Scholarly Publications |
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| SemanticTextAnnotation (v0.2-DRAFT-2020_12_03) 07 December 2020 |
Scholarly Publications |
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| Study (v0.2-DRAFT) 16 December 2020 |
Studies |
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| Taxon (v0.7-DRAFT) 09 June 2020 |
Biodiversity |
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| TaxonName (v0.1-DRAFT) 09 June 2020 |
Biodiversity |
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| TrainingMaterial (v0.9-DRAFT-2020_12_08) 08 December 2020 |
Training |
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DEPRECATED
A profile can be deprecated because:
- The working group decided that the profile is no longer required, e.g. the work undertaken was deemed unsatisfactory, or failed to accomplish the desired objective(s), or has been superceded by some other activity; or
- The working group developing it have suspended work.
If you would like to continue work on one of these profiles then please email the community public-bioschemas@w3.org to discuss.
| Name | Group | Use Cases | Cross Walk | Task & Issues | Examples | Live Deploys |
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| Beacon (v0.2-DRAFT-2018_04_23) 23 April 2018 deprecated on: 2019-11-22
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Beacons |
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| DataRecord (v0.2-DRAFT-2019_06_14) 14 June 2019 deprecated on: 2021-02-22
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Datasets |
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