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Bioschemas Profiles

The Bioschemas' profiles define a community agreed layer over the Schema.org vocabulary, providing additional constraints. These constraints capture (i) the information properties agreed by the community which are minimum (M), recommended (R), or optional (O), (ii) the cardinality of the property, i.e. whether it is expected to occur once or many times, and (iii) associated controlled vocabulary terms drawn from existing ontologies.

These guidelines provide community best practice that lead to consisent markup of life sciences resources on the Web. Comments and discussions on the mailing list or GitHub issue tracker are encouraged.


RELEASE

Released profiles have been agreed by the community and are widely deployed.

Please note that there may be a newer version in draft status when the community agree that a refinement is needed. Where applicable, these are linked from the release version with the label 'Latest draft'.

Name Group Use Cases Cross Walk Task & Issues Examples Live Deploys
ChemicalSubstance
(v0.4-RELEASE)
07 April 2020
Chemicals
DataCatalog
(v0.3-RELEASE-2019_07_01)
01 July 2019
Data Repositories
Dataset
(v0.3-RELEASE-2019_06_14)
14 June 2019
Datasets
Gene
(v0.7-RELEASE)
07 April 2020
Genes
MolecularEntity
(v0.5-RELEASE)
07 April 2020
Chemicals
Protein
(v0.11-RELEASE)
07 April 2020
Proteins
Sample
(v0.2-RELEASE-2018_11_10)
10 November 2018
Samples
Taxon
(v0.6-RELEASE)
07 April 2020
Biodiversity

DRAFT

Draft profiles are actively being worked on and are likely to change. Disucssions take place on the mailing list and the GitHub issue tracker.

Draft profiles are either working towards their first release or are refinements of a previously released version.

Name Group Use Cases Cross Walk Task & Issues Examples Live Deploys
BioSample
(v0.1-DRAFT-2019_11_12)
12 November 2019
Samples
ComputationalTool
(v0.5-DRAFT)
26 November 2019
Tools
ComputationalWorkflow
(v0.5-DRAFT-2020_07_21)
22 July 2020
Workflow
Course
(v0.9-DRAFT-2020_12_08)
08 December 2020
Training
CourseInstance
(v0.8-DRAFT-2020_10_06)
06 October 2020
Training
DataRecord
(v0.2-DRAFT-2019_06_14)
14 June 2019
Datasets
Event
(v0.2-DRAFT-2019_06_14)
14 June 2019
Events
FormalParameter
(v0.1-DRAFT-2020_07_21)
21 July 2020
Workflow
Journal
(v0.2-DRAFT-2020_12_03)
07 December 2020
Scholarly Publications
LabProtocol
(v0.6-DRAFT-2020_12_08)
08 December 2020
Laboratory Protocols
Organization
(v0.2-DRAFT-2019_07_19)
19 July 2019
Organizations
Person
(v0.2-DRAFT-2019_07_19)
19 July 2019
People
Phenotype
(v0.2-DRAFT)
05 June 2020
Phenotypes
ProteinAnnotation
(v0.4-DRAFT-2018_02_25)
25 February 2018
Proteins
ProteinStructure
(v0.5-DRAFT-2018_08_15)
15 August 2018
Proteins
PublicationIssue
(v0.2-DRAFT-2020_12_03)
07 December 2020
Scholarly Publications
PublicationVolume
(v0.2-DRAFT-2020_12_03)
07 December 2020
Scholarly Publications
RNA
(v0.1-DRAFT-2019_11_15)
15 November 2019
ScholarlyArticle
(v0.2-DRAFT-2020_12_03)
07 December 2020
Scholarly Publications
SemanticTextAnnotation
(v0.2-DRAFT-2020_12_03)
07 December 2020
Scholarly Publications
Study
(v0.2-DRAFT)
16 December 2020
Studies
Taxon
(v0.7-DRAFT)
09 June 2020
Biodiversity
TaxonName
(v0.1-DRAFT)
09 June 2020
Biodiversity
TrainingMaterial
(v0.9-DRAFT-2020_12_08)
08 December 2020
Training

DEPRECATED

Deprecated means that the group developing it have suspended work; we would be delighted for you to continue it. Please email public-bioschemas@w3.org to discuss.

Name Group Use Cases Cross Walk Task & Issues Examples Live Deploys
Beacon
(v0.2-DRAFT-2018_04_23)
23 April 2018

deprecated on: 2019-11-22

Beacons

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