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BioSample Community ComputationalTool DataCatalog Dataset Deployment Disease Gene MolecularEntity Organization Profile Protein RequestForComment Schema.org ScholarlyArticle SequenceAnnotation SequenceRange Study Taxon Type

BioSample

Deployment of BioSample Profile by EBISC

Published: 30 June 2021
Tags:
Deployment BioSample

The Human Pluripotent Stem Cell Registry (hPSCreg) have made the first deployment of the BioSample profile.

Community

Standard Properties

Published: 01 November 2021
Tags:
Community Profile

A standard set of properties have been added to all Bioschemas profiles. These properties allow consumers of markup to more easily understand the markup, and to validate it against the relevant profile. Essentially the properties form a boilerplate for any markup, see following code snippet for an example protein taken from DisProt.

Website Rebuild

Published: 22 September 2021
Tags:
Community

Today we have deployed a major rewrite of our website which has been overseen by Bert Droesbeke.

ComputationalTool

ComputationalTool Profile 1.0-RELEASE Published

Published: 02 November 2021
Tags:
Profile ComputationalTool

We are pleased to announce the release of the ComputationalTool Profile from the Tools Working Group.

ComputationalTool 1.0 Request for Comments

Published: 11 October 2021
Tags:
Profile ComputationalTool RequestForComment

The Tools Working Group have requested that the community consider their current draft of the ComputationalTool Profile 0.6-DRAFT to become 1.0-RELEASE. There are two minor changes between the draft and release version:

DataCatalog

Deployment by Protein Ensemble

Published: 08 November 2021
Tags:
Deployment DataCatalog Dataset Organization Protein SequenceAnnotation SequenceRange ScholarlyArticle

Protein Ensemble (PED), is a deposition database of structural ensembles, with an emphasis on those known to be intrinsically disordered. While the PED deployment has been in place for about a year, it was not added to our live deploy list. PED have recently updated their deployment to include links to scholarly articles.

IMI Data Catalog Deployment

Published: 02 June 2021
Tags:
Deployment Dataset DataCatalog

The IMI Data Catalog, developed as part of the FAIRplus project, has been added to our live deployment list with deployments of the Dataset and DataCatalog profiles.

Dataset

Deployment by Protein Ensemble

Published: 08 November 2021
Tags:
Deployment DataCatalog Dataset Organization Protein SequenceAnnotation SequenceRange ScholarlyArticle

Protein Ensemble (PED), is a deposition database of structural ensembles, with an emphasis on those known to be intrinsically disordered. While the PED deployment has been in place for about a year, it was not added to our live deploy list. PED have recently updated their deployment to include links to scholarly articles.

IMI Data Catalog Deployment

Published: 02 June 2021
Tags:
Deployment Dataset DataCatalog

The IMI Data Catalog, developed as part of the FAIRplus project, has been added to our live deployment list with deployments of the Dataset and DataCatalog profiles.

Deployment

Deployment by MetaNetX

Published: 11 November 2021
Tags:
Deployment MolecularEntity

MetaNetX, a database of automated model construction and genome annotation for large-scale metabolic networks, has deployed the MolecularEntity profile on over 1 million pages. The pages have been indexed in a sitemap to enable the harvesting of data.

Deployment by Protein Ensemble

Published: 08 November 2021
Tags:
Deployment DataCatalog Dataset Organization Protein SequenceAnnotation SequenceRange ScholarlyArticle

Protein Ensemble (PED), is a deposition database of structural ensembles, with an emphasis on those known to be intrinsically disordered. While the PED deployment has been in place for about a year, it was not added to our live deploy list. PED have recently updated their deployment to include links to scholarly articles.

Deployment by Bgee

Published: 08 November 2021
Tags:
Deployment Gene

Bgee, the gene expression data in animals database, has deployed the Gene profile on over 750,000 pages across 30 species. This will soon go up to 52 species with an increase in the number of pages containing markup. The pages have been indexed in a sitemap to enable the harvesting of data.

Deployment of BioSample Profile by EBISC

Published: 30 June 2021
Tags:
Deployment BioSample

The Human Pluripotent Stem Cell Registry (hPSCreg) have made the first deployment of the BioSample profile.

Deployments by the Plant Community

Published: 04 June 2021
Tags:
Deployment Gene Study Taxon

The Plant Community have added two sites to our live deployment list.

  • CorkOakDB have deployments of the Gene and Taxon profiles.
  • PIPPA: PSB Interface for Plant Phenotype Analysis have deployments of the Study and Taxon profiles.

IMI Data Catalog Deployment

Published: 02 June 2021
Tags:
Deployment Dataset DataCatalog

The IMI Data Catalog, developed as part of the FAIRplus project, has been added to our live deployment list with deployments of the Dataset and DataCatalog profiles.

Revamped Live Deploy Page

Published: 28 May 2021
Tags:
Deployment

Check out our revamped live deploy page.

Disease

Disease Profile 0.1-DRAFT Published

Published: 28 May 2021
Tags:
Profile Disease

We are pleased to announce the first draft of the Disease Profile from the Diseases Working Group.

Gene

Deployment by Bgee

Published: 08 November 2021
Tags:
Deployment Gene

Bgee, the gene expression data in animals database, has deployed the Gene profile on over 750,000 pages across 30 species. This will soon go up to 52 species with an increase in the number of pages containing markup. The pages have been indexed in a sitemap to enable the harvesting of data.

Revised Sequences Profiles Published

Published: 11 October 2021
Tags:
Profile Gene Protein SequenceAnnotation SequenceRange

The following profiles have been updated to allow the linking of sequence annotations to genes and proteins:

Deployments by the Plant Community

Published: 04 June 2021
Tags:
Deployment Gene Study Taxon

The Plant Community have added two sites to our live deployment list.

  • CorkOakDB have deployments of the Gene and Taxon profiles.
  • PIPPA: PSB Interface for Plant Phenotype Analysis have deployments of the Study and Taxon profiles.

MolecularEntity

Deployment by MetaNetX

Published: 11 November 2021
Tags:
Deployment MolecularEntity

MetaNetX, a database of automated model construction and genome annotation for large-scale metabolic networks, has deployed the MolecularEntity profile on over 1 million pages. The pages have been indexed in a sitemap to enable the harvesting of data.

Organization

Deployment by Protein Ensemble

Published: 08 November 2021
Tags:
Deployment DataCatalog Dataset Organization Protein SequenceAnnotation SequenceRange ScholarlyArticle

Protein Ensemble (PED), is a deposition database of structural ensembles, with an emphasis on those known to be intrinsically disordered. While the PED deployment has been in place for about a year, it was not added to our live deploy list. PED have recently updated their deployment to include links to scholarly articles.

Profile

ComputationalTool Profile 1.0-RELEASE Published

Published: 02 November 2021
Tags:
Profile ComputationalTool

We are pleased to announce the release of the ComputationalTool Profile from the Tools Working Group.

Standard Properties

Published: 01 November 2021
Tags:
Community Profile

A standard set of properties have been added to all Bioschemas profiles. These properties allow consumers of markup to more easily understand the markup, and to validate it against the relevant profile. Essentially the properties form a boilerplate for any markup, see following code snippet for an example protein taken from DisProt.

Revised Sequences Profiles Published

Published: 11 October 2021
Tags:
Profile Gene Protein SequenceAnnotation SequenceRange

The following profiles have been updated to allow the linking of sequence annotations to genes and proteins:

ComputationalTool 1.0 Request for Comments

Published: 11 October 2021
Tags:
Profile ComputationalTool RequestForComment

The Tools Working Group have requested that the community consider their current draft of the ComputationalTool Profile 0.6-DRAFT to become 1.0-RELEASE. There are two minor changes between the draft and release version:

Disease Profile 0.1-DRAFT Published

Published: 28 May 2021
Tags:
Profile Disease

We are pleased to announce the first draft of the Disease Profile from the Diseases Working Group.

Protein

Deployment by Protein Ensemble

Published: 08 November 2021
Tags:
Deployment DataCatalog Dataset Organization Protein SequenceAnnotation SequenceRange ScholarlyArticle

Protein Ensemble (PED), is a deposition database of structural ensembles, with an emphasis on those known to be intrinsically disordered. While the PED deployment has been in place for about a year, it was not added to our live deploy list. PED have recently updated their deployment to include links to scholarly articles.

Revised Sequences Profiles Published

Published: 11 October 2021
Tags:
Profile Gene Protein SequenceAnnotation SequenceRange

The following profiles have been updated to allow the linking of sequence annotations to genes and proteins:

RequestForComment

ComputationalTool 1.0 Request for Comments

Published: 11 October 2021
Tags:
Profile ComputationalTool RequestForComment

The Tools Working Group have requested that the community consider their current draft of the ComputationalTool Profile 0.6-DRAFT to become 1.0-RELEASE. There are two minor changes between the draft and release version:

Schema.org

Towards better findability: Bioschemas meets Schema.org

Published: 07 July 2021
Tags:
Schema.org Type

On 7 July 2021, Schema.org included five Bioschemas types for representing life sciences data in its latest release. This update signifies an important step towards developing web markup in the life sciences. It will improve the findability of many web resources in the domain and ultimately translate into more efficient research.

ScholarlyArticle

Deployment by Protein Ensemble

Published: 08 November 2021
Tags:
Deployment DataCatalog Dataset Organization Protein SequenceAnnotation SequenceRange ScholarlyArticle

Protein Ensemble (PED), is a deposition database of structural ensembles, with an emphasis on those known to be intrinsically disordered. While the PED deployment has been in place for about a year, it was not added to our live deploy list. PED have recently updated their deployment to include links to scholarly articles.

SequenceAnnotation

Deployment by Protein Ensemble

Published: 08 November 2021
Tags:
Deployment DataCatalog Dataset Organization Protein SequenceAnnotation SequenceRange ScholarlyArticle

Protein Ensemble (PED), is a deposition database of structural ensembles, with an emphasis on those known to be intrinsically disordered. While the PED deployment has been in place for about a year, it was not added to our live deploy list. PED have recently updated their deployment to include links to scholarly articles.

Revised Sequences Profiles Published

Published: 11 October 2021
Tags:
Profile Gene Protein SequenceAnnotation SequenceRange

The following profiles have been updated to allow the linking of sequence annotations to genes and proteins:

SequenceRange

Deployment by Protein Ensemble

Published: 08 November 2021
Tags:
Deployment DataCatalog Dataset Organization Protein SequenceAnnotation SequenceRange ScholarlyArticle

Protein Ensemble (PED), is a deposition database of structural ensembles, with an emphasis on those known to be intrinsically disordered. While the PED deployment has been in place for about a year, it was not added to our live deploy list. PED have recently updated their deployment to include links to scholarly articles.

Revised Sequences Profiles Published

Published: 11 October 2021
Tags:
Profile Gene Protein SequenceAnnotation SequenceRange

The following profiles have been updated to allow the linking of sequence annotations to genes and proteins:

Study

Deployments by the Plant Community

Published: 04 June 2021
Tags:
Deployment Gene Study Taxon

The Plant Community have added two sites to our live deployment list.

  • CorkOakDB have deployments of the Gene and Taxon profiles.
  • PIPPA: PSB Interface for Plant Phenotype Analysis have deployments of the Study and Taxon profiles.

Taxon

Deployments by the Plant Community

Published: 04 June 2021
Tags:
Deployment Gene Study Taxon

The Plant Community have added two sites to our live deployment list.

  • CorkOakDB have deployments of the Gene and Taxon profiles.
  • PIPPA: PSB Interface for Plant Phenotype Analysis have deployments of the Study and Taxon profiles.

Type

Towards better findability: Bioschemas meets Schema.org

Published: 07 July 2021
Tags:
Schema.org Type

On 7 July 2021, Schema.org included five Bioschemas types for representing life sciences data in its latest release. This update signifies an important step towards developing web markup in the life sciences. It will improve the findability of many web resources in the domain and ultimately translate into more efficient research.