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Protein (Type)

Version: 0.2-RELEASE-2019_06_19 (2019-06-14)


If you spot any errors or omissions with this type, please file an issue in our GitHub.


Contributors

The following people have been involved in the creation of this specification document. They are all members of the Proteins group.

Group Leader(s)

Maria Martin

Leyla Garcia

Other team members

Canonical URL

http://bioschemas.org/Protein

Schema.org hierarchy

This is a new Type that fits into the schema.org hierarchy as follows:
Thing > BioChemEntity > Protein

Description

Protein is here used in its widest possible definition, as classes of amino acid based molecules. Amyloid-beta Protein in human (UniProt P05067), eukaryota (e.g. an OrthoDB group) or even a single molecule that one can point to are all of type schema:Protein. A protein can thus be a subclass of another protein, e.g. schema:Protein as a UniProt record can have multiple isoforms inside it which would also be schema:Protein. They can be imagined, synthetic, hypothetical or naturally occurring.

Latest profiles

Latest release: 0.3-RELEASE-2019_09_02

Previous profiles

Previous version: 0.2-DRAFT-2019_06_14

Previous release: 0.1-RELEASE-2018_11_10

Group Task & Issues
Proteins

You can read the draft version of this specification here.




Key to specification table

Schema.org properties where the Expected Types have been changed, or new (i.e., Bioschemas created) properties/types are green.

Schema.org properties/types are red.

Pending Schema.org properties/types are blue.

External (i.e., from 3rd party ontology) properties/types are black.


CD = Cardinality


Property Expected Type Description
Properties from Protein (pending schema.org integration).
hasSequence Text Nucleotide or amino acid sequence.
Properties from BioChemEntity (pending schema.org integration).
associatedDisease MedicalCondition or
PropertyValue or
URL
Disease associated to this BioChemEntity. Such a disease can be a MedicalCondition or a URL. If you want to add an evidence supporting the association, please use PropertyValue.
bioChemInteraction BioChemEntity A BioChemEntity that is know to interact with this item.
bioChemSimilarity BioChemEntity A similar molecular entity, e.g., obtained by fingerprint similarity algorithm.
biogicalRole DefinedTerm A role played by the molecular entity within a biological context.
hasBioChemEntityPart BioChemEntity Indicates a BioChemEntity that (in some sense) has this BioChemEntity as a part.
Inverse property: isPartOfBioChemEntity
hasMolecularFunction DefinedTerm or
PropertyValueor
URL
Molecular function performed by this BioChemEntity; please use PropertyValue if you want to include any evidence.
hasRepresentation PropertyValue or
Text or
URL
A common representation such as a protein sequence or chemical structure for this entity. For images use schema.org/image.
isEncodedByBioChemEntity Gene Another BioChemEntity encoding this one.
Inverse property: encodesBioChemEntity.
isInvolvedInBiologicalProcess DefinedTerm or PropertyValue or
URL
Biological process this BioChemEntity is involved in; please use PropertyValue if you want to include any evidence.
isLocatedInSubcellularLocation DefinedTerm or PropertyValue or
URL
Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence.
isPartOfBioChemEntity BioChemEntity Indicates a BioChemEntity that is (in some sense) a part of this BioChemEntity.
Inverse property: hasBioChemEntityPart
taxonomicRange DefinedTerm or Taxon or
Text or
URL
The taxonomic grouping of the organism that expresses, encodes, or in someway related to the BioChemEntity.
Properties from Thing
additionalType URL An additional type for the item, typically used for adding more specific types from external vocabularies in microdata syntax. This is a relationship between something and a class that the thing is in. In RDFa syntax, it is better to use the native RDFa syntax - the 'typeof' attribute - for multiple types. Schema.org tools may have only weaker understanding of extra types, in particular those defined externally.
alternateName Text An alias for the item.
description Text A descripton of the item.
disambiguatingDescription Text A sub property of description. A short description of the item used to disambiguate from other, similar items. Information from other properties (in particular, name) may be necessary for the description to be useful for disambiguation.
identifier PropertyValue or
Text or
URL
The identifier property represents any kind of identifier for any kind of Thing, such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See background notes for more details.
image ImageObject or
URL
An image of the item. This can be a URL or a fully described ImageObject.
mainEntityOfPage CreativeWork or
URL
Indicates a page (or other CreativeWork) for which this thing is the main entity being described. See background notes for details.
Inverse property: mainEntity
name Text The name of the item.
potentialAction Action Indicates a potential Action, which describes an idealized action in which this thing would play an 'object' role.
sameAs URL URL of a reference Web page that unambiguously indicates the item's identity. E.g. the URL of the item's Wikipedia page, Wikidata entry, or official website.
subjectOf CreativeWork or
Event
A CreativeWork or Event about this Thing..
Inverse property: about.
url URL URL of the item.

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