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RNA DRAFT Profile

Version: 0.1-DRAFT (15 November 2019)


If you spot any errors or omissions with this type, please file an issue in our GitHub.


Contributors

Group Leader(s)
Other team members

Schema.org hierarchy

This Profile fits into the schema.org hierarchy as follows:

Thing > BioChemEntity > RNA

Description





Key to specification table

Schema.org properties where the Expected Types have been changed, or new (i.e., Bioschemas created) properties/types are green.

Schema.org properties/types are red.

Pending Schema.org properties/types are blue.

External (i.e., from 3rd party ontology) properties/types are black.


CD = Cardinality


Property Expected Type Description CD Controlled Vocabulary Example
Marginality: Optional.
additionalType URL
Schema:

An additional type for the item, typically used for adding more specific types from external vocabularies in microdata syntax. This is a relationship between something and a class that the thing is in. In RDFa syntax, it is better to use the native RDFa syntax - the ‘typeof’ attribute - for multiple types. Schema.org tools may have only weaker understanding of extra types, in particular those defined externally.


ONE
alternateName Text
Schema:

An alias for the item.


associatedDisease MedicalCondition
PropertyValue
URL
Schema:

Disease associated to this BioChemEntity. Such disease can be a MedicalCondition or a URL. If you want to add an evidence supporting the association, please use PropertyValue.


bioChemInteraction BioChemEntity
Schema:

A BioChemEntity that is known to interact with this item.


bioChemSimilarity BioChemEntity
Schema:

A similar molecular entity, e.g., obtained by fingerprint similarity algorithms.


biologicalRole DefinedTerm
Schema:

A role played by the molecular entity within a biological context.


description Text
Schema:

A description of the item.


disambiguatingDescription Text
Schema:

A sub property of description. A short description of the item used to disambiguate from other, similar items. Information from other properties (in particular, name) may be necessary for the description to be useful for disambiguation.


encodesBioChemEntity BioChemEntity
Schema:

Another BioChemEntity encoded by this one. Inverse property:isEncodedByBioChemEntity.


hasBioChemEntityPart BioChemEntity
Schema:

Indicates a BioChemEntity that (in some sense) has this BioChemEntity as a part. Inverse property:isPartOfBioChemEntity.


hasMolecularFunction DefinedTerm
PropertyValue
URL
Schema:

Molecular function performed by this BioChemEntity; please use PropertyValue if you want to include any evidence.


hasRepresentation PropertyValue
Text
URL
Schema:

A common representation such as a protein sequence or chemical structure for this entity. For images use schema.org/image.


hasSequence Text
Schema:

Nucleotide or amino acid sequence.


hasSequenceAnnotation PropertyValue
SequenceAnnotation
Schema:

Pointer to a sequence annotation; please use PropertyValue if you want to include any evidence.


identifier PropertyValue
Text
URL
Schema:

The identifier property represents any kind of identifier for any kind ofThing, such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. Seebackground notesfor more details.


image ImageObject
URL
Schema:

An image of the item. This can be aURLor a fully describedImageObject.


isCodingRNA Boolean
Schema:

Indicates whether or not this RNA is a coding one.


isEncodedByBioChemEntity DNA
Gene
RNA
Schema:

Another BioChemEntity encoding by this one. Inverse property:encodesBioChemEntity.


isInvolvedInBiologicalProcess DefinedTerm
PropertyValue
URL
Schema:

Biological process this BioChemEntity is involved in; please use PropertyValue if you want to include any evidence.


isLocatedInSubcellularLocation DefinedTerm
PropertyValue
URL
Schema:

Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence.


ONE
isMatchedBy SequenceMatchingModel
Schema:

A model matching this BioChemEntity.


ONE
isPartOfBioChemEntity BioChemEntity
Schema:

Indicates a BioChemEntity that is (in some sense) a part of this BioChemEntity. Inverse property:hasBioChemEntityPart.


ONE
name Text
Schema:

The name of the item.


sameAs URL
Schema:

URL of a reference Web page that unambiguously indicates the item’s identity. E.g. the URL of the item’s Wikipedia page, Wikidata entry, or official website.


taxonomicRange DefinedTerm
Taxon
Text
URL
Schema:

The taxonomic grouping of the organism that expresses, encodes, or in someway related to the BioChemEntity.


ONE
url URL
Schema:

URL of the item.


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