Workflow DRAFT Profile

A workflow consists of an orchestrated and repeatable pattern of activity enabled by the systematic organization of resources into processes that transform materials, provide services, or process information. It can be depicted as a sequence of operations, the work of a person or group, the work of an organization of staff, or one or more simple or complex mechanisms. (source Wikipedia.org)

Latest profiles

Latest release: none

Previous profiles

Previous version: 0.2-DRAFT-2019_11_29

Group	Use Cases	Cross Walk	Task & Issues	Examples	Live Deploys
Workflow

You can read the release version of this specification here.

Key to specification table

Schema.org properties where the Expected Types have been changed, or new (i.e., Bioschemas created) properties/types are green.

Schema.org properties/types are red.

Pending Schema.org properties/types are blue.

External (i.e., from 3rd party ontology) properties/types are black.

CD = Cardinality

View all examples

//Property: contributor
"contributor" : "Stefan Helfrich"


//Property: creator
"creator" : "Thomas Duigou"


//Property: dateCreated
"dateCreated" ; "2019-04-30"


//Property: dateModified
"dateModified" : "2019-11-05"


//Property: description
"description": "RetroPath2.0 builds a reaction network from a set of source compounds to a set of sink compounds. When applied in a retrosynthetic fashion, the source is composed of the target compounds and the sink is composed of the available reactants (for instance in the context of metabolic engineering the sink is the set of native metabolites of a chassis strain). From amongst all the chemical reactions generated using RetroPath2.0 (in the retrosynthetic way), only a subset may effectively link a source to a subset of sink compounds. This sub-network is considered as a scope and is output in dedicated files."


//Property: identifier
"identifier": "72782bbecfeff6f3e43e2278ee3353adf4515207"


//Property: license
"license" : "https://spdx.org/licenses/CC-BY-4.0.html"


//Property: name
"name": "RetroPath2.0 IBISBA workflow node"


//Property: sdPublisher
"sdPublisher" : "IBISBA Admin"


//Property: version
"version" : 1

Property	Expected Type	Description	CD	Example
Marginality: Minimum.
creator	Organization Person	Schema: The creator/author of this CreativeWork. This is the same as the Author property for CreativeWork.	MANY	View ≪creator≫ example Property ≪creator≫ example `"creator" : "Thomas Duigou"`
dateCreated	Date DateTime	Schema: The date on which the CreativeWork was created or the item was added to a DataFeed.	ONE	View ≪dateCreated≫ example Property ≪dateCreated≫ example `"dateCreated" ; "2019-04-30"`
input	Thing	Schema: the input required to use the workflow (eg. xl spreadsheet, xml file, …)	MANY
name	Text	Schema: The name of the item. Bioschemas: The name of the item as input	ONE	View ≪name≫ example Property ≪name≫ example `"name": "RetroPath2.0 IBISBA workflow node"`
output	Thing	Schema: the output produced by the workflow	MANY
programmingLanguage	ComputerLanguage Text	Schema: The computer programming language.	MANY
sdPublisher	Organization Person	Schema: Indicates the party responsible for generating and publishing the current structured data markup, typically in cases where the structured data is derived automatically from existing published content but published on a different site. For example, student projects and open data initiatives often re-publish existing content with more explicitly structured metadata. The sdPublisherproperty helps make such practices more explicit.	ONE	View ≪sdPublisher≫ example Property ≪sdPublisher≫ example `"sdPublisher" : "IBISBA Admin"`
url	URL	Schema: URL of the item.	ONE
version	Number Text	Schema: The version of the CreativeWork embodied by a specified resource. Bioschemas: version is a release, date modified may not warrant a release, but last date modified and access to all versions is important	ONE	View ≪version≫ example Property ≪version≫ example `"version" : 1`
Marginality: Recommended.
contributor	Organization Person	Schema: A secondary contributor to the CreativeWork or Event.	MANY	View ≪contributor≫ example Property ≪contributor≫ example `"contributor" : "Stefan Helfrich"`
description	Text	Schema: A description of the item.	ONE	View ≪description≫ example Property ≪description≫ example "description": "RetroPath2.0 builds a reaction network from a set of source compounds to a set of sink compounds. When applied in a retrosynthetic fashion, the source is composed of the target compounds and the sink is composed of the available reactants (for instance in the context of metabolic engineering the sink is the set of native metabolites of a chassis strain). From amongst all the chemical reactions generated using RetroPath2.0 (in the retrosynthetic way), only a subset may effectively link a source to a subset of sink compounds. This sub-network is considered as a scope and is output in dedicated files."
hasPart	CreativeWork	Schema: Indicates an item or CreativeWork that is part of this item, or CreativeWork (in some sense). Inverse property: isPartOf.	MANY
keywords	Text	Schema: Keywords or tags used to describe this content. Multiple entries in a keywords list are typically delimited by commas.	ONE
license	CreativeWork URL	Schema: A license document that applies to this content, typically indicated by URL.	ONE	View ≪license≫ example Property ≪license≫ example `"license" : "https://spdx.org/licenses/CC-BY-4.0.html"`
softwareRequirements	Text URL	Schema: Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (Examples: DirectX, Java or .NET runtime). Supersedes requirements. Bioschemas: Renaming schema.org/requirements as softwareRequirements	MANY
targetProduct	SoftwareApplication	Schema: Target Operating System / Product to which the code applies. If applies to several versions, just the product name can be used.	MANY
Marginality: Optional.
alternateName	Text	Schema: An alias for the item.	MANY
dateModified	Date DateTime	Schema: The date on which the CreativeWork was most recently modified or when the item’s entry was modified within a DataFeed.	ONE	View ≪dateModified≫ example Property ≪dateModified≫ example `"dateModified" : "2019-11-05"`
identifier	PropertyValue Text URL	Schema: The identifier property represents any kind of identifier for any kind of Thing, such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See background notes for more details.	MANY	View ≪identifier≫ example Property ≪identifier≫ example `"identifier": "72782bbecfeff6f3e43e2278ee3353adf4515207"`
image	ImageObject URL	Schema: An image of the item. This can be a URL or a fully described ImageObject.	MANY