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ProteinAnnotation Specification v. 0.4

Profile

Thing
Bioschemas specifications and types list.

Description:


Property Expected Type Description CD Controlled Vocabulary
Marginality: Minimum.
additionalType URL
Schema: An additional type for the item, typically used for adding more specific types from external vocabularies in microdata syntax. This is a relationship between something and a class that the thing is in. In RDFa syntax, it is better to use the native RDFa syntax - the 'typeof' attribute - for multiple types. Schema.org tools may have only weaker understanding of extra types, in particular those defined externally.
Bioschemas: ProteinAnnotation profile usage. Currently, a ProteinAnnotation additional type should be set to any of the values defined in the controlled vocabulary. If you want to add other terms, please contact Bioschemas.
MANY SIO SIO SIO SIO SIO
identifier PropertyValue

Text

URL
Schema: The identifier property represents any kind of identifier for any kind of Thing, such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See background notes for more details.
Bioschemas: Recommendation: identifiers.org whenever possible
ONE
preferredLabel Text
Schema: Indicates the preferred label to refer to a specific (sub)type of BioChemEntity
Bioschemas: Profile name. For the Protein profile it MUST be "ProteinAnnotation"
ONE Bioschemas profiles
Marginality: Recommended.
additionalProperty.creation_method PropertyValue
Schema: Method used to create this annotation
Bioschemas: Method used to create this annotation
ONE
alternateName Text
Schema: An alias for the item.
Bioschemas:
MANY
description Text
Schema: A description of the item.
Bioschemas:
ONE
name Text
Schema: The name of the item.
Bioschemas:
ONE
url URL
Schema: URL of the item.
Bioschemas: Bioschemas usage. Link to the official webpage associated to this entity.
ONE
Marginality: Optional.
additionalProperty PropertyValue
Schema: A property-value pair representing an additional characteristics of the entitity, e.g. a product feature or another characteristic for which there is no matching property in schema.org. Note: Publishers should be aware that applications designed to use specific schema.org properties (e.g. http://schema.org/width, http://schema.org/color, http://schema.org/gtin13, ...) will typically expect such data to be provided using those properties, rather than using the generic property/value mechanism.
Bioschemas: Bioschemas usage. Additional to the use of name and description to describe this property in a human-readable way, additionalType should be used to specify the nature of the property/relation. Controlled vocabularies should be used whenever possible.
MANY Yes as better suits to describe this additional property
contains BioChemEntity
URL
Schema: Indicates a BioChemEntity that is (in some sense) a part of this BioChemEntity. Inverse property: isPartOf.
Bioschemas: Indicates a BioChemEntity that is (in some sense) a part of this BioChemEntity. Inverse property: isPartOf.
MANY
hasRepresentation Text
URL
PropertyValue
Schema: Representation of this entity. For instance, chemical structure or sequence
Bioschemas: Representation of this entity. For instance, chemical structure or sequence
MANY
image ImageObject

URL
Schema: An image of the item. This can be a URL or a fully described ImageObject.
Bioschemas:
MANY
isContainedIn BioChemEntity
URL
Schema: Indicates a BioChemEntity that this BioChemEntity is (in some sense) part of.
Bioschemas: Indicates a BioChemEntity that this BioChemEntity is (in some sense) part of.
MANY
location Place
PostalAddress
PropertyValue
Text
URL
Schema: The location of for example where the event is happening, an organization is located, or where an action takes place. Bioschemas usage. In Bioschemas location can be refer to a position in a chromosome or sequence or to a physical place where, for instance, a sample is stored. Using additionalType is advised to make the distinction. For instance, FALDO can be used for sequence coordinates.
Bioschemas: The location of for example where the event is happening, an organization is located, or where an action takes place. Bioschemas usage. In Bioschemas location can be refer to a position in a chromosome or sequence or to a physical place where, for instance, a sample is stored. Using additionalType is advised to make the distinction. For instance, FALDO can be used for sequence coordinates.
MANY Yes as it better suits to describe the location.
mainEntityOfPage CreativeWork

URL
Schema: Indicates a page (or other CreativeWork) for which this thing is the main entity being described. See background notes for details.
Bioschemas: Bioschemas usage. Link via Record or URL to the main Record representing this entity in a dataset
ONE
sameAs URL
Schema: URL of a reference Web page that unambiguously indicates the item's identity. E.g. the URL of the item's Wikipedia page, Wikidata entry, or official website.
Bioschemas: URL of a reference Web page that unambiguously indicates the item's identity. E.g. the URL of the item's Wikipedia page, Wikidata entry, or official website. Bioschemas usage. Link to any resource other than the Record and the official Webpage, for instance a Wikipedia page.
MANY

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